Software & Servers

 

Protein surface shape analysis

3D-Surfer

Database of Computational 3D structure models of proteins of E.coli

EcoliPredict (v2.0)    Integrated in EcoliHub website for E.coli data resource

DNA Sequence Analysis

    GenPortrait (v2.0)    Visualization Tool for Genome Sequences

Protein Function Analysis

    PFP    Protein Function Prediction Server
   (The best prediction server assessed at CASP7 and AFP-SIG in ISMB 2005)

Suboptimal Alignment

    Suboptimal Alingment(v1.0)    A software that does suboptimal alignment