CASP 6  RESULTS

CASP 6 RESULTS
Daisuke Kihara's Lab
Otoniel Venezuela
Yen Hock Tan
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0198 m1 MC 235 234 5.2 4.4 5 Phosphate transport system regulator PhoU, putative, T. maritima 1SUM 
m2 MC 178 5.5 2.6 6.2
m3 MC 23 1.5 2.6 12.5
m4 MC 58 4.1 3.9 10.5
m5 MC 52 3.2 3.5 2.2
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0199 m1 MC 338 101 3.8 3.5 49.2 Heat shock operon repressor HrcA, T. maritima 1STZ
m2 MC 139 2.5 4.2 100
m3 MC 78 2.3 4.4 64.3
m4 MC 157 7.5 2 12.5
m5 MC 188 5.2 4.6 65.3
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0200 m1 MR 255 208 2.9 5.7 57.8 Conserved hypothetical protein, D. radiodurans 1T70
m2 MC 236 3.5 5.7 65.2
m3 MR 208 3.1 5.7 79.3
m4 MC 69 3.5 3.9 55.1
m5 MC 40 2.6 3.5 82.5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0201 m1 MC 94 56 4.9 2.6 23.2 Hypothetical protein, T. maritima 1S12
m2 MC 56 5.4 3.1 23.2
m3 MC 48 5.7 3.3 2.1
m4 MC ERROR
m5 MR MISSING
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0202 m1 MC 249 ERROR Hypothetical protein, A. fulgidus 1SUW
m2 MC 249 3.2 4.6 81.7
m3 MC ERROR
m4 MR 249 6.2 1.6 9.7
m5 MR 249 7.8 1.6 7.5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0203 m1 ERROR At5g08170, Arabidopsis 1VKP
m2 MC 382 69 4.6 2.8 51.8
m3 MC 32 3.4 1.2 8.3
m4 MC 32 3.3 1.6 12.5
m5 MC 32 3.6 1.6 8.3
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0204 m1 MC 351 ERROR At5g18200, Arabidopsis 1VKV
m2   130 4.2 3.5 10.6
m3          
m4          
m5          
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0205 m1   130         At2g34160, Arabidopsis 1VM0
m2 MC 55 4.8 3.9 100
m3 ERROR
m4
m5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0206 m1 MC 220 24 4.5 0.7 8.3 BclA, B. anthracis  
m2 MC 56 4.4 2.6 7.1
m3 MC 24 4.1 0 4.2
m4 MC 64 4.4 2.8 4.7
m5 MC 48 6.8 0.7 6.2
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0208 m1 MY MISTAKE, Otto Erase it :) EFR41, E.faecalis 1TZ9
m2
m3
m4
m5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0209 m1 MISSING IR47, H.influenzae 1XQB
m2
m3
m4
m5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0211 m1 MC 144 141 2.9 5.6 79.7 HR1958, Human 1XPW
m2 MC 45 5.7 3.3 100
m3 MC 139 2.9 5.7 73.3
m4 MR 144 2 5.9 61 1TVG
m5 MR ERROR
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0212 m1 MC 126 ERROR SOR45, S. oneidensis 1TZA
m2 MR ERROR
m3 MR 126 5.6 2.8 40
m4 MC 51 4.7 2.6 10
m5 MC ERROR
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0213 m1 MC 103 48 4.9 2 2.1 Hypothetical protein, E. coli 1TE7
m2 MC 32 5.2 1.6 9.4
m3 MC 56 5.6 2 5.4
m4 MC 87 3.2 4.1 79.3
m5 MC 78 3.6 3.7 66.7
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0214 m1 MC 110 ERROR Hypothetical protein, P. furiosus 1S04
m2 MC 56 6.5 1.2 7.1
m3 MR MISSING
m4 MC 56 4.4 2.3 23.2
m5 MC 44 4.2 3.1 80
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0215 m1 MC 76 66 5.1 2.3 33.3 Hypothetical membrane protein, T. acidophilum 1X9B
m2 MR ERROR
m3 MR 126 5.6 2.8 40
m4 MC 51 4.7 2.6 10
m5 MC ERROR
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0216 m1   435 ERROR TM0727, T. maritima 1VL4
m2  
m3  
m4  
m5  
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0222 m1 MC 373 Theorical Model Spore coat polysaccharide biosynthesis protein spsE, B. subtilis 1LVI
m2 MC
m3 MR
m4 MC
m5 MC
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0223 m1 MC 206 118 2.8 5 29.7 Putative Nitroreductase, T. maritima 1VKW
m2 MR 113 2.7 3.5 42.5
m3 MC 48 5.7 2.3 20.8
m4 MC 106 3.3 4.4 99.1
m5 MC 95 2.6 4.4 35.8
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0224 m1 MC 87 77 2.7 4.2 79.2 TM0979, T. maritima 1RHX
m2 MC 61 2.8 3.7 70.5
m3 MR MISSING
m4 MC ERROR 1X9A
m5 MC
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0226 m1 MR 290 64 4.4 3.1 3.1 TTHB84orF1199200, T. thermophilus 1WIW
m2 MC ERROR
m3 MR 64 5.3 2.8 18.8
m4 MC ERROR
m5 MC 40 5.8 2.6 5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0227 m1 MR 121 40 6.5 2 15 TTHB84orF1350600, T. thermophilus 1WK2
m2 MC ERROR
m3 MC 16 2 2 18.8
m4 MC 40 6.5 0.7 12.5
m5 MC 40 5.7 1.2 5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0228 m1 ERROR Nicotinate phosphoribosyltransferase, S. cerevisiae 1VLP
m2 MR 439 429 4.8 4.7 7.9
m3 MC 40 3.9 2.8 34.4
m4 MC 176 4.3 3.5 10.5
m5 MC 72 6 2 10.4
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0229 m1   138 MISSING TM0919, T. maritima 1VLA
m2  
m3  
m4  
m5 MC 138 3.4 6.1 87.3
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0230 m1 MC 104 73 3.7 3.7 13.7 TM0487, T. maritima 1WCJ
m2 MR 76 3.9 3.7 44.7
m3 MC 75 4.3 3.7 25.3
m4 MR 81 4 3.5 8.6 1UWD
m5 MC 24 2.2 2.6 12.5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0231 m1 MR 142 135 1.4 6.7 100 Glia maturation factor gamma, Mouse 1VKK
m2 MR 118 1.7 6.3 100
m3 MR 133 2.1 6.5 100
m4 MR 135 2.6 6.1 87.4
m5   ERROR
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0232 m1 MC 236 38 2.5 3.5 81.6 Atu5508, A. tumefaciens  
m2 MR 205 2.5 6.7 80
m3 MC 210 3.1 6.3 71.4
m4 MR 203 2.8 6.3 70.4
m5 MC 16 3 0.7 6.2
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0233 m1 MC 362 65 1.4 5.2 100 Anthranilate phosphoribosyltransferase 2, Nostoc sp. pcc 7120 1VQU
m2 MC 66 1.4 5.2 100
m3 MC 66 1.5 5.2 100
m4 MC 63 1.5 4.9 100
m5 MC 66 2.3 4.9 100
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0234 m1   165         Alr5027, Nostoc sp. pcc 7120 1VL7
m2 MC 82 2.8 4.7 90.3
m3 ERROR
m4
m5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0235 m1   499 61 3.9 4.1 54.1 Ubiquitin carboxyl-terminal hydrolase 6, S. cerevisiae 1VJV
m2   48 7.9 2.3 8.3
m3   61 3.9 4.1 54.1
m4   56 4.40 3.30 0
m5 MR 61 3.2 3.9 95.1
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0237 m1 NO PDB file provided Apical merozoite antigen 1, P. vivax 1W8K
m2
m3  
m4 1W81
m5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0238 m1 MC 244 124 6.1 6.1 6.5 Predicted coding region BBA68, B. burgdorferi 1W33
m2 MC 112 5 4.1 6.2
m3 MC 80 6 2.8 6.2
m4 MC 117 5.4 4.2 7.7
m5 MC 93 4.8 5 10.8
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0239 m1 MC 98 48 4.8 2.3 6.2 Hypothetical protein PAE0736, P. aerophilum, str. IM2 1RKI
m2 MR MISSING
m3 MC 24 4.4 0.7 8.3
m4 MC 48 7.2 1.2 10.4
m5 MC 55 3.3 3.7 27.3
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0240 m1 MC 90 40 4.9 1.2 7.5 tonb, E. coli 1U07
m2 MC 32 2.4 3.3 81.2
m3 MC 40 4.9 1.2 7.5
m4 MC 66 2.8 4.1 65.2
m5 MC 40 4.9 1.2 7.5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0241 m1 MC 237 56 6.4 1.6 5.4 Alpha-acetolactate decarboxylase, B. brevis  
m2 MC 56 6.1 1.2 3.6
m3 MR 56 6.3 1.2 8.9
m4 MC 40 6.1 1.6 12.5
m5 MC 56 6.3 2 5.4
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0243 m1 MC 93 78 1.4 5.2 65.4 F93, Sulfolobus turreted icosahedral virus  
m2 MR 77 1.7 4.9 70.1
m3 MC 24 3.6 2 12.5
m4 MC 24 3.5 2.6 12.5
m5 MR 78 1.4 5.2 65.4
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0244 m1 MR 301 258 3.2 6.8 76 galu, E. coli  
m2 MC Error
m3 MR 225 2 5.9 81.8
m4 MC 55 2.3 3.9 72.7
m5 MC 55 4.1 3.7 50.9
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0246 m1 ERROR CA Files 3-isopropylmalate dehydrogenase, T. maritima 1VLC
m2
m3
m4
m5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0247 m1 MR 364 364 2.4 7.4 76.4 aminomethyltransferase, E. coli 1VLO
m2 MC 137 2.7 5.7 79.5
m3 MR 364 2.5 7.6 87.5
m4 MC 60 2.4 4.4 91.1
m5 MC 32 1 3.7 88.5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0248 m1 ERROR CA Files Hypothetical protein, M. pneumoniae M129 1TD6
m2
m3 MC 294 16 1.6 2.6 12.5
m4 ERROR CA Files
m5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0249 m1 Error Conserved hypothetical protein, C. tepidum TLS 1T6S
m2 MR 209 118 5.6 4.1 55.9
m3 MC 76 2.8 4.4 88.2
m4 MC 71 2.9 4.7 100
m5 MC 67 3.1 3.9 16.4
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0251 m1 MC 102 102 3.7 4.9 82.2 Conserved hypothetical protein, S. aureus subsp. aureus N315 1XG8
m2 MC ERROR
m3  
m4 MC 20 2.5 1.2 6.2
m5 MC 102 6.5 3.1 27.8
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0262 m1 MC 256 24 4.6 1.2 0 Hypothetical protein, A. pernix 1WFX
m2   error
m3 MC 24 4.6 1.2 0
m4 MC 64 5 3.3 35.9
m5 MC 56 6.5 0.7 3.6
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0263 m1 MR 101 101 2.5 5.2 86 Hypothetical protein, E. coli 1WD6
m2 MC 101 3.2 4.7 46
m3   ERROR
m4  
m5 MC 101 5.3 2.3 4.2
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0264 m1 MC 294 50 3 3.5 86 Probable diphtine synthase APE0931, A. pernix 1WDE
m2 MR 294 2.2 7 70.6
m3 MC 26 4.6 2 12.5
m4 MC 52 6.7 2 8.3
m5 MC 87 2.5 4.4 82.7
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0265 m1 MR 109 54 1.2 4.7 100 Hypothetical transcriptional regulator, S. tokodaii  
m2 MC 58 1.9 4.6 100
m3 MR 62 2.4 4.2 85.5
m4 MC 62 2.5 4.4 85.5
m5 MC 32 4 2.8 9.4
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0266 m1 MC 152 150 1.9 6.6 100 Hypothetical protein APE2540, A. pernix 1WDV
m2 MR 150 2 6.6 100
m3 MR 149 2.6 6.2 100
m4 MC 25 2 3.5 100
m5 MC 84 3 4.7 100
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0267 m1 MC 175 170 2.3 6.8 100 Acetyltransferase, T. thermophilus 1WK4
m2 CA FILE      
m3 MC 48 4.4 2.8 10.4
m4 MR 141 2.7 6 84.4
m5 MC 139 3.6 6 83.5
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0268 m1 MR 285 274 1.6 7.5 93.8 mraW protein, T. thermophilus 1WG8
m2 MC 16 1.8 2.3 6.2
m3 MC 56 5.4 3.3 73.2
m4 MC 101 4.2 5 88.1
m5 MC ERROR
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0269 m1 250 ERROR thioredoxin peroxidase, A. pernix 1VGS
m2 MC 240 3 6.6 84
m3 MC 91 2.1 4.7 86.8
m4 MC 250 3 6.6 84
m5 MC 80 1.5 5.2 88.9
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0271 m1 MC 161 87 1.6 5.5 100 Hypothetical conserved protein, T. thermophilus 1VGG
m2 MR 161 1.9 6.3 91.6
m3 MC 161 1.7 6.5 92.7
m4 MC 161 2 6.3 91.7
m5 MC 161 4.5 2.6 15.6
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0272 m1 MC 211 56 4.8 2.6 7.1 Hypothetical protein, T. thermophilus 1WJ9
m2 MC 32 5.4 0.7 12.5
m3 ERROR      
m4 MC 32 5.6 1.2 6.2
m5 ERROR      
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0273 m1 MC 187 80 6.4 3.1 38.8 Hypothetical cytosolic protein, T. thermophilus 1WDJ
m2   Missing
m3 MC 80 7 2.8 26.2
m4 MC 87 5.2 3.7 51.7
m5 MC 80 4.9 3.1 56.2
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0274 m1 MC 159 41 1.4 4.6 100 Probable nitrilotriacetate monooxygenase component B, T. thermophilus 1WGB
m2 MC 40 1.6 4.2 100
m3 MR 33 1.1 3.9 84.8
m4 MC 38 1.8 3.9 76.3
m5 MC 39 1.5 4.1 100
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0275 m1 MC 137 57 2.3 3.7 94.7 Hypothetical conserved protein, T. thermophilus 1WJG
m2 MC 25 1 3.7 100
m3 MR 62 1.7 4.4 69.4
m4 MC 26 1.2 3.7 100
m5 MC 71 2.1 4.4 93
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0276 m1 MC 184 79 2 5.2 98.7 Conserved hypothetical protein, T. thermophilus 1WKC
m2 MC 24 2.4 2.8 16.7
m3 MR 81 2.5 5.2 100
m4 MR 81 2.2 5.2 100
m5 MC 79 2.4 5.2 100
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0277 m1 MC 119 112 4.1 5 80.4 Probable nucleotidyltransferase, T. thermophilus 1WJ8
m2 MR 114 2.1 5.9 90.4
m3 MC 115 1.4 6.3 100
m4 MC 116 1.8 6.2 100
m5 MC ERROR
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0279 m1 MC 261 113 4.7 5 55 Uroporphyrinogen-III synthase, T. thermophilus 1WD7
m2 MC 230 4.3 3.5 12
m3 MC 144 5 3.7 11.8
m4 MC 113 4.6 5 55.6
m5 MC 113 4.6 5 55.6
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0280 m1 MC 208 104 5.2 2.6 14.3 Putative phosphoribosyl transferase, T. thermophilus 1WD5
m2 MR ERROR
m3 MC 156 5.8 2 28.1
m4 MC 125 4.6 3.5 17.2
m5 MC 46 2.7 3.9 100
Target Prediction Method Target Length Alignment Length RMSD Z-Score Seq Identity % Description PDB Code
T0281 m1 MC 70 48 5.8 2.8 70.8 Hypothetical protein, T. thermophilus 1WHZ
m2 MC 61 4.2 4.1 100
m3 MR 48 5.6 2.3 31.2
m4 MC 56 7.1 3.3 25
m5 MC 40 5.6 2 42.5