H PRLA000101 D Structure derived matrix (SDM) for alignment of distantly related sequences (Prlic et al., 2000) R PMID:10964983 A Prlic, A., Domingues, F.S. and Sippl, M.J. T Structure-derived substitution matrices for alignment of distantly related sequences J Protein Eng. 13, 545-550 (2000) M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV 2.09 -0.50 2.87 -0.57 0.60 3.60 -0.73 0.13 1.78 4.02 0.33 -1.30 -2.08 -2.51 6.99 -0.75 0.13 0.33 0.34 -0.83 2.60 -0.12 0.99 -0.16 1.20 -1.97 1.23 2.97 0.27 -0.96 0.79 -1.20 -2.11 -0.12 -0.41 4.36 -1.42 0.54 0.76 -0.01 -1.50 -0.46 -0.62 -0.40 5.89 -0.97 -1.40 -2.43 -2.77 0.13 -1.47 -1.81 -2.93 -1.76 2.76 -0.39 -1.19 -2.10 -2.65 -0.31 -1.49 -2.11 -1.98 -0.93 1.56 2.43 -0.38 1.42 0.83 0.66 -2.19 0.92 1.11 -0.71 0.31 -1.81 -1.96 2.91 -0.04 -0.63 -2.01 -2.58 1.04 -0.13 -1.86 -1.86 -1.04 0.99 1.61 -1.62 3.75 -0.76 -1.40 -2.25 -2.19 1.13 -2.31 -1.61 -2.67 -0.22 0.76 1.23 -2.41 0.80 3.28 -0.53 0.21 -1.10 0.72 -2.19 0.24 -0.26 -0.04 -1.44 -2.00 -1.56 -0.19 -1.09 -0.91 5.45 0.34 -0.06 0.40 0.71 0.31 1.04 0.31 0.29 -0.74 -1.75 -2.30 -0.06 -1.34 -1.11 -0.29 2.36 0.13 -0.15 0.30 -0.75 -0.59 0.60 -0.21 -0.81 -0.52 -0.96 -0.86 -0.10 -1.58 -0.69 0.93 1.20 2.04 -0.66 -0.04 -2.89 -1.91 -0.76 -0.81 -2.70 -1.21 -1.48 0.25 -0.14 -1.94 0.87 2.29 -5.34 -1.18 -0.57 6.96 -1.25 -0.75 -0.36 -1.21 0.13 -0.61 -1.64 -1.62 -0.12 0.08 0.70 -1.72 -0.41 1.96 -1.98 -1.56 -0.41 2.15 3.95 0.02 -1.52 -2.17 -2.02 0.34 -1.38 -1.84 -1.96 -0.35 1.94 0.81 -1.27 0.61 0.51 -1.11 -1.11 0.05 -1.09 0.21 2.05 //